Battery connection

I have 2x80w solar panels connected to my solar regulator (SolarTech MP3129) and
I have 2 12v deep cycle batteries. 1x75ah & 1x100ah.
Is there a difference to connecting the batteries in parallel and have o pair
running to the regulator as opposed to have the batteries connected by separate
cable to the same connectors on the regulator?
I am using 6m2 cables as I have about 4m distance to cover.
My guess is 'no difference' .
I was hoping to have the batteries in different locations due to weight balance and space
What are your thoughts?

Cheers

Marcel


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